Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015906888.1_cds_XP_016457062.1_50829
CDS Infomation

[gene=LOC107780950] [db_xref=GeneID:107780950] [protein=probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2] [protein_id=XP_016457062.1] [location=complement(join(38027..38153,38616..38734,38839..39077,39186..39311,39732..40816,40982..41184,42479..42748))] [gbkey=CDS]
Sequence

ATGGGAACGGAGCGGAAGAGGAAAGTAAGCTTGTTTGATGTGGTGGATGAGACGCCAGCT
AAGAAAGTGAATGTTGGAAGCGTAAACGGTAGCATGACGCCGTCGATTAATAAGTGGAAC
GGGAAGCCTTACTCACAGAGATTCTATGAGATATTGGAGAAAAGGAAGACTCTTCCGGTT
TGGCATCAAAAGGAGGAGTTTTTACAGGCTTTAAAATCTAATCAAACCCTAATTTTGGTT
GGTGAAACCGGTAGTGGTAAAACCACTCAGATTCCGCAGTTTGTTTTAGATGCTGTTGAA
GTTGAGACGGCGGATAAGCGCAGGAAGTATATGATTGGTTGCACTCAACCTCGGAGGGTG
GCTGCAATGTCTGTGTCTCGTCGAGTTGCTGAGGAGATGGATGTTGCAATTGGGGAAGAA
GTTGGATATAGCATCCGTTTTGAAGACTGCAGTAGTACTAAAACTGTTTTAAAATACTTA
ACAGATGGTATGCTTTTAAGGGAAGCAATGGCAGATCCTCTATTGGAACGCTACAAAGTA
ATTATTCTGGATGAAGCCCATGAAAGAACTTTGGCAACAGATGTCCTGTTTGGGCTTCTT
AAGGAGGTGTTGAAAAATAGACCAGACCTAAAGCTTGTTGTTATGAGTGCCACACTTGAA
GCAGAGAAGTTTCAGGGTTACTTCTTTGGTGCGCCCCTCATGAAAGTGCCTGGAAGGCTT
CATCCTGTGGAAATTTTCTACACTCAGGAGCCTGAGAGAGATTATCTCGAGGCTGCCATT
CGGACTGTGGTGCAGATACACACATGTGAACCTCCTGGTGACATACTTGTTTTCCTTACT
GGAGAAGAGGAGATTGAAGATGCTTGTCGCAAAATCAATAAGGAGGTTAGTAATTTGGGT
GATCAAGTGGGCCCTGTTAAAGTGGTGCCTCTTTATTCTACACTTCCCCCAGCTATGCAG
CAAAAGATATTTGATTCAGCCCCACCCTCGGTGGTGGAGGGTGGTCCTGCTGGCAGGAAG
ATTGTTGTGTCAACCAACATTGCAGAGACATCTTTGACAATTGATGGCATTGTATATGTC
ATAGATCCGGGATTTGCTAAACAAAAAGTTTATAACCCTAGGGTGCGTGTTGAATCTTTG
TTGGTGTCTCCTATTTCGAAGGCCAGTGCCCACCAGAGATCAGGACGTGCTGGAAGAACG
CAGCCAGGGAAATGCTTTAGACTTTACACAGAGAAAAGTTTCCATAACGACCTTCAACCA
CAGACCTATCCAGAAATACTTCGGTCAAATTTGGCTAATACAGTTCTAACTTTGAAGAAG
TTAGGTATTGACGACCTGGTTCATTTTGATTTTATGGATCCTCCTGCTCCAGAGACGTTG
ATGAGAGCACTGGAGGTTTTGAATTACTTGGGAGCATTGGATGATGAGGGGAACTTGACT
AGGTTGGGTGAGATTATGAGTGAATTTCCTCTTGATCCTCAGATGGCAAAAATGCTTGTT
GTCAGCTCAGAATTCAACTGCTCCAATGAAATCCTCTCAATATCCGCCATGCTATCAGTA
CCCAATTGCTTTGTCCGGCCTAGGGAGGCTCAGAAAGCTGCAGATGAAGCAAAGAATCGG
TTCGGTCACATAGATGGGGATCATTTGACGTTGCTGAATGTGTATCATGCCTACAAGCAG
AACACGGAAGATCCTCAATGGTGCTACGAGAATTTCATCAATCAGAGGGCTCTCAAATCA
GCCGACAATGTGAGGCAACAGCTTTCTCGCATAATGGCCAGGTTCAACCTCAAGTTATGC
AGCACAGACTTCAACAGTCGCGACTACTACGTAAACATAAGAAAGGCTATGTTAGCTGGA
TATTTCATGCAGGTTGCTCACCTAGAGCGTACTGGGCACTATCTGACTGTTAAAGACAAT
CAAGTGGTTCACTTGCATCCTTCAAATTGCCTGGATCATAAGCCAGAATGGGTTATCTAT
AATGAATATGTCTTGACAAGCAGGAATTTCATCCGTACTGTGACTGATATTCGTGGTGAA
TGGTTGGTTGATATCGCACCACATTACTATGACCTTGCGAACTTTCCGCAATGTGAGGCA
AAACGAGTTCTTGAGCGGTTATACAAGAAGCGAGAGCGAGAAAAAGACGAAAGCAAAAGC
AAAAGATGA

Peptide Sequence

PEP ID

XP_016457062.1
PEP Infomation

PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Nicotiana tabacum]
Sequence

MGTERKRKVSLFDVVDETPAKKVNVGSVNGSMTPSINKWNGKPYSQRFYEILEKRKTLPV
WHQKEEFLQALKSNQTLILVGETGSGKTTQIPQFVLDAVEVETADKRRKYMIGCTQPRRV
AAMSVSRRVAEEMDVAIGEEVGYSIRFEDCSSTKTVLKYLTDGMLLREAMADPLLERYKV
IILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRL
HPVEIFYTQEPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKINKEVSNLG
DQVGPVKVVPLYSTLPPAMQQKIFDSAPPSVVEGGPAGRKIVVSTNIAETSLTIDGIVYV
IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHNDLQP
QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLT
RLGEIMSEFPLDPQMAKMLVVSSEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKNR
FGHIDGDHLTLLNVYHAYKQNTEDPQWCYENFINQRALKSADNVRQQLSRIMARFNLKLC
STDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIY
NEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLERLYKKREREKDESKS
KR

Transcript Sequence

Gene sequence data has not been registered.